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Robust Hypothesis Test for Nonlinear Effect with Gaussian Processes

Neural Information Processing Systems

This work constructs a hypothesis test for detecting whether an data-generating function $h: \real^p \rightarrow \real$ belongs to a specific reproducing kernel Hilbert space $\mathcal{H}_0$, where the structure of $\mathcal{H}_0$ is only partially known. Utilizing the theory of reproducing kernels, we reduce this hypothesis to a simple one-sided score test for a scalar parameter, develop a testing procedure that is robust against the mis-specification of kernel functions, and also propose an ensemble-based estimator for the null model to guarantee test performance in small samples. To demonstrate the utility of the proposed method, we apply our test to the problem of detecting nonlinear interaction between groups of continuous features. We evaluate the finite-sample performance of our test under different data-generating functions and estimation strategies for the null model. Our results revealed interesting connection between notions in machine learning (model underfit/overfit) and those in statistical inference (i.e. Type I error/power of hypothesis test), and also highlighted unexpected consequences of common model estimating strategies (e.g.


Reviews: Robust Hypothesis Test for Nonlinear Effect with Gaussian Processes

Neural Information Processing Systems

The paper proposes a statistical test for particular non-linear effects in a linear mixed model (LMM). The problem of testing non-linear effects is relevant, especially in the natural sciences. The experimental validation has its flaws, but may be considered acceptable for a conference paper. The method consists of multiple parts: 1) The main new idea introduced in the paper is to introduce a kernel parameter (garotte) that interpolates between a null model and the desired alternative model and to perform a score test on this parameter. This elegant new idea is combined with several established steps to obtain the final testing procedure: 2) Defining a score statistic and deriving an approximate null distribution for the statistic based on the Satterthwaite approximation.


Robust Hypothesis Test for Nonlinear Effect with Gaussian Processes

Jeremiah Liu, Brent Coull

Neural Information Processing Systems

Utilizing the theory of reproducing kernels, we reduce this hypothesis to a simple one-sided score test for a scalar parameter, develop a testing procedure that is robust against the misspecification of kernel functions, and also propose an ensemble-based estimator for the null model to guarantee test performance in small samples. To demonstrate the utility of the proposed method, we apply our test to the problem of detecting nonlinear interaction between groups of continuous features. We evaluate the finite-sample performance of our test under different data-generating functions and estimation strategies for the null model. Our results reveal interesting connections between notions in machine learning (model underfit/overfit) and those in statistical inference (i.e. Type I error/power of hypothesis test), and also highlight unexpected consequences of common model estimating strategies (e.g.


A Robust Hypothesis Test for Tree Ensemble Pruning

de Marchi, Daniel, Welch, Matthew, Kosorok, Michael

arXiv.org Artificial Intelligence

Gradient boosted decision trees are some of the most popular algorithms in applied machine learning. They are a flexible and powerful tool that can robustly fit to any tabular dataset in a scalable and computationally efficient way. One of the most critical parameters to tune when fitting these models are the various penalty terms used to distinguish signal from noise in the current model. These penalties are effective in practice, but are lacking in robust theoretical justifications. In this paper we develop and present a novel theoretically justified hypothesis test of split quality for gradient boosted tree ensembles and demonstrate that using this method instead of the common penalty terms leads to a significant reduction in out of sample loss. Additionally, this method provides a theoretically well-justified stopping condition for the tree growing algorithm. We also present several innovative extensions to the method, opening the door for a wide variety of novel tree pruning algorithms.


Robust Hypothesis Test for Nonlinear Effect with Gaussian Processes

Liu, Jeremiah, Coull, Brent

Neural Information Processing Systems

This work constructs a hypothesis test for detecting whether an data-generating function $h: \real p \rightarrow \real$ belongs to a specific reproducing kernel Hilbert space $\mathcal{H}_0$, where the structure of $\mathcal{H}_0$ is only partially known. Utilizing the theory of reproducing kernels, we reduce this hypothesis to a simple one-sided score test for a scalar parameter, develop a testing procedure that is robust against the mis-specification of kernel functions, and also propose an ensemble-based estimator for the null model to guarantee test performance in small samples. To demonstrate the utility of the proposed method, we apply our test to the problem of detecting nonlinear interaction between groups of continuous features. We evaluate the finite-sample performance of our test under different data-generating functions and estimation strategies for the null model. Our results revealed interesting connection between notions in machine learning (model underfit/overfit) and those in statistical inference (i.e.


Robust Hypothesis Test for Nonlinear Effect with Gaussian Processes

Liu, Jeremiah, Coull, Brent

Neural Information Processing Systems

This work constructs a hypothesis test for detecting whether an data-generating function $h: \real^p \rightarrow \real$ belongs to a specific reproducing kernel Hilbert space $\mathcal{H}_0$, where the structure of $\mathcal{H}_0$ is only partially known. Utilizing the theory of reproducing kernels, we reduce this hypothesis to a simple one-sided score test for a scalar parameter, develop a testing procedure that is robust against the mis-specification of kernel functions, and also propose an ensemble-based estimator for the null model to guarantee test performance in small samples. To demonstrate the utility of the proposed method, we apply our test to the problem of detecting nonlinear interaction between groups of continuous features. We evaluate the finite-sample performance of our test under different data-generating functions and estimation strategies for the null model. Our results revealed interesting connection between notions in machine learning (model underfit/overfit) and those in statistical inference (i.e. Type I error/power of hypothesis test), and also highlighted unexpected consequences of common model estimating strategies (e.g. estimating kernel hyperparameters using maximum likelihood estimation) on model inference.